I followed the instruction, but did one week more on secondary fermentation than it is supposed to be. After I bottled it, one week passed i didn't see any bubbles in the bottle. Did the yeast run out and no more further carbonation?
When you bottle condition, two things must happen:
It can often take 2 weeks for this process to complete, and at 4 weeks the beer's taste will improve.
You're probably being impatient - or you forgot step 1.
Don't expect to see bubbles in the bottle. Without opening a glass bottle, I don't think you can tell if it is carbonated or not. The exception to this is if it explodes, of course. Then you know it's carbonated (far too much).
When the bottle is under pressure, most of the produced CO2 remains dissolved into the liquid as it is produced, so you won't see bubbles rising to the surface.